Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-103/megassr/results/hub_GCF_040281465.1/fasta/hub_GCF_040281465.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              98
Total size of examined sequences (bp):           4816873
Total number of identified SSRs:                 24
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	9
4	2
5	4
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG	-	-	-	4								4
GC	-	-	-	1								1
ACC	-	-	1									1
CCG	-	-	1									1
CGC	-	-	1									1
CGG	-	-	2									2
GCA	-	-						1				1
GCT	-	-	1									1
GTC	-	-			1							1
TAA	-	-	1									1
GCCA	-	1										1
TGGC	-	1										1
ATTTT	1											1
GCGCC	1											1
GCGCG	1											1
GCGCT	1											1
ACCACG											1	1
CTGGCG	1											1
GAAGTC	1											1
GCCAGC	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG/CG	-	-	-	5								5
AAT/ATT	-	-	1									1
ACC/GGT	-	-	1									1
ACG/CGT	-	-			1							1
AGC/CTG	-	-	1					1				2
CCG/CGG	-	-	4									4
AGCC/CTGG	-	2										2
AAAAT/ATTTT	1											1
AGCGC/CGCTG	1											1
CCGCG/CGCGG	2											2
AAGTCG/ACTTCG	1											1
ACCACG/CGTGGT											1	1
AGCGCC/CGCTGG	2											2
