Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-100/megassr/results/hub_GCF_040281405.1/fasta/hub_GCF_040281405.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              83
Total size of examined sequences (bp):           4935369
Total number of identified SSRs:                 23
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	6
4	1
5	5
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG	-	-	-	2		1				3
GC	-	-	-	2						2
TA	-	-	-	1						1
CGG	-	-	2							2
GCG	-	-	3							3
GCT	-	-	1							1
GCCA	-	1								1
AGGGA	1									1
CCACG	1									1
GCGCC	1									1
GCGCG	1									1
TCAAC	1									1
CTGGCG	1									1
GAAGTC	1									1
GCCAGC	1									1
TAAAAA	1									1
TGGTCG									1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT/AT	-	-	-	1						1
CG/CG	-	-	-	4		1				5
AGC/CTG	-	-	1							1
CCG/CGG	-	-	5							5
AGCC/CTGG	-	1								1
AACTC/AGTTG	1									1
AAGGG/CCCTT	1									1
ACGCC/CGTGG	1									1
CCGCG/CGCGG	2									2
AAAAAT/ATTTTT	1									1
AAGTCG/ACTTCG	1									1
ACCACG/CGTGGT									1	1
AGCGCC/CGCTGG	2									2
