Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-99/megassr/results/hub_GCF_040281385.1/fasta/hub_GCF_040281385.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              97
Total size of examined sequences (bp):           4819304
Total number of identified SSRs:                 25
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	7
4	1
5	5
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT	-	-	-	1						1
CG	-	-	-	3						3
GC	-	-	-	3						3
AGC	-	-	1							1
CCG	-	-	1	1						2
CGC	-	-	1							1
CGG	-	-	2							2
CTG	-	-						1		1
TGGC	-	1								1
ATTTT	1									1
CAGCG	1									1
CGCGC	1									1
GGCGC	1									1
TGCGC	1									1
CACGAC									1	1
CGACTT	1									1
CGCCAG	1									1
GCTGGC	1									1
TACTGA								1		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT/AT	-	-	-	1						1
CG/CG	-	-	-	6						6
AGC/CTG	-	-	1					1		2
CCG/CGG	-	-	4	1						5
AGCC/CTGG	-	1								1
AAAAT/ATTTT	1									1
AGCGC/CGCTG	2									2
CCGCG/CGCGG	2									2
AAGTCG/ACTTCG	1									1
ACCACG/CGTGGT									1	1
ACTGAT/AGTATC								1		1
AGCGCC/CGCTGG	2									2
