Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-97/megassr/results/hub_GCF_040281335.1/fasta/hub_GCF_040281335.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              89
Total size of examined sequences (bp):           4764724
Total number of identified SSRs:                 30
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
2	7
3	9
4	1
5	5
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																					1																																														2	3
AT	-	-	-	1																																																																																	1
CG	-	-	-	4																																																																																	4
GC	-	-	-	2																																																																																	2
CCG	-	-	1																																																																																		1
CGC	-	-	1																																																																																		1
CGG	-	-	1																																																																																		1
CTG	-	-			1																																																																																1
GCG	-	-	1																																																																																		1
GCT	-	-	2																																																																																		2
TAA	-	-	1																																																																																		1
TGG	-	-	1																																																																																		1
GCCA	-	1																																																																																			1
ATTTT	1																																																																																				1
CGCGC	2																																																																																				2
GCGCA	1																																																																																				1
GCGCC	1																																																																																				1
ATGGTC				1																																																																																	1
CTGGCG	1																																																																																				1
GAAGTC	1																																																																																				1
GCCAGC	1																																																																																				1
TAAAAA	1																																																																																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																					1																																														2	3
AT/AT	-	-	-	1																																																																																	1
CG/CG	-	-	-	6																																																																																	6
AAT/ATT	-	-	1																																																																																		1
ACC/GGT	-	-	1																																																																																		1
AGC/CTG	-	-	2		1																																																																																3
CCG/CGG	-	-	4																																																																																		4
AGCC/CTGG	-	1																																																																																			1
AAAAT/ATTTT	1																																																																																				1
AGCGC/CGCTG	1																																																																																				1
CCGCG/CGCGG	3																																																																																				3
AAAAAT/ATTTTT	1																																																																																				1
AAGTCG/ACTTCG	1																																																																																				1
ACCATG/ATGGTC				1																																																																																	1
AGCGCC/CGCTGG	2																																																																																				2
