Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-96/megassr/results/hub_GCF_040281325.1/fasta/hub_GCF_040281325.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              79
Total size of examined sequences (bp):           4750006
Total number of identified SSRs:                 23
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	5
3	7
4	1
5	4
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																																																																					2	2
CG	-	-	-	2		1																																																																																																																	3
GC	-	-	-	2																																																																																																																			2
AGC	-	-	1																																																																																																																				1
CCG	-	-	2																																																																																																																				2
GCA	-	-							1																																																																																																														1
GCC	-	-	1																																																																																																																				1
GCG	-	-	2																																																																																																																				2
GCCA	-	1																																																																																																																					1
CGCTG	1																																																																																																																						1
GCGCG	1																																																																																																																						1
GGCGC	1																																																																																																																						1
TGCGC	1																																																																																																																						1
ATGGTC				1																																																																																																																			1
CGACTT	1																																																																																																																						1
CTGGCG	1																																																																																																																						1
GCTGGC	1																																																																																																																						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																																																																					2	2
CG/CG	-	-	-	4		1																																																																																																																	5
AGC/CTG	-	-	1						1																																																																																																														2
CCG/CGG	-	-	5																																																																																																																				5
AGCC/CTGG	-	1																																																																																																																					1
AGCGC/CGCTG	2																																																																																																																						2
CCGCG/CGCGG	2																																																																																																																						2
AAGTCG/ACTTCG	1																																																																																																																						1
ACCATG/ATGGTC				1																																																																																																																			1
AGCGCC/CGCTGG	2																																																																																																																						2
