Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-95/megassr/results/hub_GCF_040281305.1/fasta/hub_GCF_040281305.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              74
Total size of examined sequences (bp):           4509697
Total number of identified SSRs:                 18
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	7
5	3
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	3			3
GC	-	-	-	1			1
AGC	-	-	1				1
CCG	-	-	1		1		2
CGG	-	-	1				1
GCC	-	-	1				1
GCG	-	-	2				2
CGCGG	1						1
GCGCA	1						1
GGCGC	1						1
CACGAC						1	1
CGACTT	1						1
CGCCAG	1						1
GGTGAT	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	4			4
AGC/CTG	-	-	1				1
CCG/CGG	-	-	5		1		6
AGCGC/CGCTG	1						1
CCGCG/CGCGG	2						2
AAGTCG/ACTTCG	1						1
ACCACG/CGTGGT						1	1
ACCATC/ATGGTG	1						1
AGCGCC/CGCTGG	1						1
