Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-91/megassr/results/hub_GCF_040281185.1/fasta/hub_GCF_040281185.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              58
Total size of examined sequences (bp):           4765957
Total number of identified SSRs:                 24
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	6
3	8
5	3
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1	1
CG	-	-	-	3																			3
GC	-	-	-	3																			3
AGC	-	-	1																				1
CCG	-	-	1	1																			2
CGC	-	-	2																				2
CGG	-	-	1																				1
GCC	-	-	1																				1
GCG	-	-	1																				1
CGCGC	2																						2
GGCGC	1																						1
ACACGC	1																						1
CGACTT	1																						1
CGCCAG	1																						1
GAGGAT	1																						1
GCCAGC	1																						1
TGGTCG			1																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1	1
CG/CG	-	-	-	6																			6
AGC/CTG	-	-	1																				1
CCG/CGG	-	-	6	1																			7
CCGCG/CGCGG	3																						3
AAGTCG/ACTTCG	1																						1
ACACGC/CGTGTG	1																						1
ACCACG/CGTGGT			1																				1
AGCGCC/CGCTGG	2																						2
AGGATG/ATCCTC	1																						1
