Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-111/megassr/results/hub_GCF_040281165.1/fasta/hub_GCF_040281165.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              69
Total size of examined sequences (bp):           4852817
Total number of identified SSRs:                 34
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	8
4	1
5	4
6	15

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG	-	-	-	4									4
GC	-	-	-	1									1
TA	-	-	-	1									1
AGC	-	-	1										1
CCG	-	-	1										1
CGC	-	-	1										1
CGG	-	-	3										3
CTG	-	-										1	1
GTC	-	-		1									1
TGGC	-	1											1
CAGCG	1												1
CGCGC	1												1
GGCGC	1												1
TGCGC	1												1
ACCGAG						1							1
ATTTTA			1										1
CAAATA							1						1
CAACGA		1											1
CAGCGC	1												1
CCATGA		1											1
CGACTT	1												1
CGCCAG	1												1
GCACCG	1												1
GCAGGA						1							1
GCCGCA	1												1
GCCGTT	2												2
GCTGGC	1												1
TAAAAA	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AT/AT	-	-	-	1									1
CG/CG	-	-	-	5									5
ACG/CGT	-	-		1									1
AGC/CTG	-	-	1									1	2
CCG/CGG	-	-	5										5
AGCC/CTGG	-	1											1
AGCGC/CGCTG	2												2
CCGCG/CGCGG	2												2
AAAAAT/ATTTTT	1												1
AAAATT/AATTTT			1										1
AAATAC/ATTTGT							1						1
AACGAC/CGTTGT		1											1
AACGGC/CCGTTG	2												2
AAGTCG/ACTTCG	1												1
ACCATG/ATGGTC		1											1
ACCGAG/CGGTCT						1							1
ACCGGC/CCGGTG	1												1
AGCAGG/CCTGCT						1							1
AGCCGC/CGGCTG	1												1
AGCGCC/CGCTGG	3												3
