Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-89/megassr/results/hub_GCF_040281125.1/fasta/hub_GCF_040281125.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              94
Total size of examined sequences (bp):           4899982
Total number of identified SSRs:                 30
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
2	8
3	6
4	2
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-									1																																																																						2	3
AT	-	-	-	2																																																																																													2
CG	-	-	-	2		1																																																																																											3
GC	-	-	-	3																																																																																													3
CGC	-	-	1																																																																																														1
CGG	-	-	2																																																																																														2
GCG	-	-	1																																																																																														1
GCT	-	-	1																																																																																														1
GTC	-	-		1																																																																																													1
TATT	-	1																																																																																															1
TGGC	-	1																																																																																															1
CGCGG	1																																																																																																1
CTGCG	1																																																																																																1
GCGCG	1																																																																																																1
GGCGC	1																																																																																																1
CACGAC								1																																																																																									1
CAGCGC	1																																																																																																1
CGACTT	1																																																																																																1
CGCCAG	1																																																																																																1
GCCAGC	1																																																																																																1
TCCTGT												1																																																																																					1
TGTATT	1																																																																																																1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-									1																																																																						2	3
AT/AT	-	-	-	2																																																																																													2
CG/CG	-	-	-	5		1																																																																																											6
ACG/CGT	-	-		1																																																																																													1
AGC/CTG	-	-	1																																																																																														1
CCG/CGG	-	-	4																																																																																														4
AAAT/ATTT	-	1																																																																																															1
AGCC/CTGG	-	1																																																																																															1
AGCGC/CGCTG	1																																																																																																1
CCGCG/CGCGG	3																																																																																																3
AAATAC/ATTTGT	1																																																																																																1
AACAGG/CCTGTT												1																																																																																					1
AAGTCG/ACTTCG	1																																																																																																1
ACCACG/CGTGGT								1																																																																																									1
AGCGCC/CGCTGG	3																																																																																																3
