Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-88/megassr/results/hub_GCF_040281105.1/fasta/hub_GCF_040281105.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              35
Total size of examined sequences (bp):           4613995
Total number of identified SSRs:                 32
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	10
4	1
5	4
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
CG	-	-	-	4											4
GC	-	-	-	2											2
TA	-	-	-	1											1
AGC	-	-	1												1
CCG	-	-	1												1
CGC	-	-	1	1											2
CGG	-	-	2	1											3
CTG	-	-				1									1
GCC	-	-	1												1
GCG	-	-	1												1
TATT	-	1													1
CGCGC	2														2
GGCGC	1														1
TGCGC	1														1
CCGCAG	1														1
CGACTT	1														1
CGGCAA	1														1
CTGGCA						1									1
CTGGCG	1														1
CTGTTG	1														1
GCTGGC	1														1
GTGGTC	1														1
TCGTGG				1											1
TGGTCG														1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AT/AT	-	-	-	1											1
CG/CG	-	-	-	6											6
AGC/CTG	-	-	1			1									2
CCG/CGG	-	-	6	2											8
AAAT/ATTT	-	1													1
AGCGC/CGCTG	1														1
CCGCG/CGCGG	3														3
AACAGC/CTGTTG	1														1
AACGGC/CCGTTG	1														1
AAGTCG/ACTTCG	1														1
ACCACG/CGTGGT	1			1										1	3
ACTGGC/AGTGCC						1									1
AGCCGC/CGGCTG	1														1
AGCGCC/CGCTGG	2														2
