Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-86/megassr/results/hub_GCF_040281065.1/fasta/hub_GCF_040281065.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              71
Total size of examined sequences (bp):           4884981
Total number of identified SSRs:                 27
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	8
4	2
5	3
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG	-	-	-	3								3
GC	-	-	-	2								2
ATA	-	-	1									1
CCG	-	-	1									1
CGC	-	-	1									1
CGG	-	-	1									1
CTG	-	-	1									1
GCC	-	-	1									1
GCG	-	-	1									1
GCT	-	-	1									1
TAAA	-	1										1
TGGC	-	1										1
CGCTG	1											1
GCGCG	1											1
GGCGC	1											1
CACGAC											1	1
CCAGTG						1						1
CCTGTT									1			1
CGACTT	1											1
CGCCAG	1											1
GCAAGG						1						1
GCCAGC	1											1
GCGGAG	1											1
TCTCGG		1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG/CG	-	-	-	5								5
AAT/ATT	-	-	1									1
AGC/CTG	-	-	2									2
CCG/CGG	-	-	5									5
AAAT/ATTT	-	1										1
AGCC/CTGG	-	1										1
AGCGC/CGCTG	1											1
CCGCG/CGCGG	2											2
AACAGG/CCTGTT									1			1
AAGGGC/CCCTTG						1						1
AAGTCG/ACTTCG	1											1
ACCACG/CGTGGT											1	1
ACCGAG/CGGTCT		1										1
ACTGGC/AGTGCC						1						1
AGCGCC/CGCTGG	2											2
AGGCGG/CCGCCT	1											1
