Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-84/megassr/results/hub_GCF_040280985.1/fasta/hub_GCF_040280985.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              103
Total size of examined sequences (bp):           4861449
Total number of identified SSRs:                 21
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	8
4	1
5	3
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG	-	-	-	3							3
GC	-	-	-	1							1
AGC	-	-	1								1
AGG	-	-	1								1
CCG	-	-	1								1
CGG	-	-	1								1
CTG	-	-								1	1
GCC	-	-	1								1
GCG	-	-	2								2
TGGC	-	1									1
CGCGC	1										1
CGCGG	1										1
GCGCC	1										1
ATGGTC										1	1
CCGGAG		1									1
CTGGCG	1										1
GAAGTC	1										1
GCCAGC	1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG/CG	-	-	-	4							4
AGC/CTG	-	-	1							1	2
AGG/CCT	-	-	1								1
CCG/CGG	-	-	5								5
AGCC/CTGG	-	1									1
CCGCG/CGCGG	3										3
AAGTCG/ACTTCG	1										1
ACCATG/ATGGTC										1	1
AGCCGG/CCGGCT		1									1
AGCGCC/CGCTGG	2										2
