Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-83/megassr/results/hub_GCF_040280965.1/fasta/hub_GCF_040280965.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              91
Total size of examined sequences (bp):           4776362
Total number of identified SSRs:                 27
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	8
4	1
5	5
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG	-	-	-	4		1			5
GC	-	-	-	2					2
AGC	-	-	1						1
CCG	-	-	1						1
CGG	-	-	1	1					2
GAC	-	-		1					1
GCC	-	-	1						1
GCG	-	-	2						2
GCCA	-	1							1
CGCGG	1								1
CGCTG	1								1
GCCCA			1						1
GCGCG	1								1
GGCGC	1								1
CGACTT	1								1
CTGGCG	1								1
GCCGCT			1						1
GCTGGC	1								1
TGGTCA		1							1
TGGTCG								1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	6		1			7
ACG/CGT	-	-		1					1
AGC/CTG	-	-	1						1
CCG/CGG	-	-	5	1					6
AGCC/CTGG	-	1							1
AGCCC/CTGGG			1						1
AGCGC/CGCTG	1								1
CCGCG/CGCGG	3								3
AAGTCG/ACTTCG	1								1
ACCACG/CGTGGT								1	1
ACCATG/ATGGTC		1							1
AGCGCC/CGCTGG	2								2
AGCGGC/CCGCTG			1						1
