Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-82/megassr/results/hub_GCF_040280945.1/fasta/hub_GCF_040280945.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              102
Total size of examined sequences (bp):           4827529
Total number of identified SSRs:                 26
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	7
4	1
5	5
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
AT	-	-	-	1										1
CG	-	-	-	2										2
GC	-	-	-	4										4
AGC	-	-	1											1
CCG	-	-	2											2
CGC	-	-	1											1
CGG	-	-		1										1
GCA	-	-						1						1
GCC	-	-	1											1
TGGC	-	1												1
AAAAT	1													1
CGCTG	1													1
GCGCA	1													1
GCGCC	1													1
GCGCG	1													1
AAGAAC	1													1
CGCCAG	1													1
GAAGTC	1													1
GCCAGC	1													1
TCAGTA													1	1
TGGTCG									1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
AT/AT	-	-	-	1										1
CG/CG	-	-	-	6										6
AGC/CTG	-	-	1					1						2
CCG/CGG	-	-	4	1										5
AGCC/CTGG	-	1												1
AAAAT/ATTTT	1													1
AGCGC/CGCTG	2													2
CCGCG/CGCGG	2													2
AACAAG/CTTGTT	1													1
AAGTCG/ACTTCG	1													1
ACCACG/CGTGGT									1					1
ACTGAT/AGTATC													1	1
AGCGCC/CGCTGG	2													2
