Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-81/megassr/results/hub_GCF_040280925.1/fasta/hub_GCF_040280925.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              204
Total size of examined sequences (bp):           4798982
Total number of identified SSRs:                 27
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
2	6
3	7
4	1
5	5
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																						1																																												2	3
CG	-	-	-	5																																																																																5
GC	-	-	-	1																																																																																1
AGC	-	-	1																																																																																	1
CCG	-	-	1	1																																																																																2
CGC	-	-	1																																																																																	1
GCA	-	-						1																																																																												1
GCC	-	-	1																																																																																	1
GCG	-	-	1																																																																																	1
GCCA	-	1																																																																																		1
AAAAT	1																																																																																			1
CGCTG	1																																																																																			1
GCGCC	1																																																																																			1
GCGCG	1																																																																																			1
TGCGC	1																																																																																			1
CTGGCG	1																																																																																			1
GAAGTC	1																																																																																			1
GCCAGC	1																																																																																			1
TACTGA							1																																																																													1
TGGTCG									1																																																																											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																						1																																												2	3
CG/CG	-	-	-	6																																																																																6
AGC/CTG	-	-	1					1																																																																												2
CCG/CGG	-	-	4	1																																																																																5
AGCC/CTGG	-	1																																																																																		1
AAAAT/ATTTT	1																																																																																			1
AGCGC/CGCTG	2																																																																																			2
CCGCG/CGCGG	2																																																																																			2
AAGTCG/ACTTCG	1																																																																																			1
ACCACG/CGTGGT									1																																																																											1
ACTGAT/AGTATC							1																																																																													1
AGCGCC/CGCTGG	2																																																																																			2
