Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-81/megassr/results/hub_GCF_040223985.1/fasta/hub_GCF_040223985.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              248
Total size of examined sequences (bp):           5394852
Total number of identified SSRs:                 31
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	4
5	7
6	16

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
GC	-	-	-	4	4
CAG	-	-	1		1
CCA	-	-	1		1
CGG	-	-	1		1
TGG	-	-	1		1
CCCGC	1				1
CCTGG	1				1
CGATC	1				1
CGCAG	1				1
CGCGC	1				1
GCGCA		1			1
GCGCG	1				1
AGCACA			1		1
AGCCCT	1				1
ATCGTG		1			1
CACCGG	1				1
CCTGCA		1			1
CGACCA	1				1
CGTCGC			1		1
GCAGCG	1				1
GCCAAC	1				1
GCCAGG	1				1
GCGCGT	1				1
GGCTGG	1				1
GGGCCA	1				1
TCAGGC	1				1
TCATCG	1				1
TTGCCC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	4	4
ACC/GGT	-	-	2		2
AGC/CTG	-	-	1		1
CCG/CGG	-	-	1		1
AGCGC/CGCTG	1	1			2
AGGCC/CCTGG	1				1
ATCCG/ATCGG	1				1
CCCCG/CGGGG	1				1
CCGCG/CGCGG	2				2
AACGCC/CGTTGG	1				1
AAGCAC/CTTGTG			1		1
AAGGGC/CCCTTG	1				1
ACCACG/CGTGGT	1				1
ACCGGC/CCGGTG	1				1
ACCTGC/AGGTGC		1			1
ACGATC/ATCGTG		1			1
ACGATG/ATCGTC	1				1
ACGCGC/CGCGTG	1				1
ACGGCG/CCGTCG			1		1
AGCCCC/CTGGGG	1				1
AGCCCT/AGGGCT	1				1
AGCCTG/AGGCTC	1				1
AGCGGC/CCGCTG	1				1
AGGGCC/CCCTGG	2				2
