Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-80/megassr/results/hub_GCF_040151455.1/fasta/hub_GCF_040151455.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              21
Total size of examined sequences (bp):           5142780
Total number of identified SSRs:                 25
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	9
5	7
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CG	-	-	-	1				1
AGC	-	-	1					1
CAC	-	-	1					1
CAG	-	-	1					1
CGC	-	-	2					2
CGG	-	-	2					2
GCG	-	-		1				1
GGC	-	-		1				1
CACAT	1							1
CCGCG	1							1
CGCGG	1							1
GCGTG	1							1
GGCCG	1							1
GGGCC	1							1
TGTTT	1							1
AATGAA	1							1
AGCAGG	1							1
CGGTCA	1							1
CTGCAG	1							1
GCCAGA							1	1
GCGCTG	1							1
TAAAAA				1				1
TGCTGT	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
CG/CG	-	-	-	1				1
ACC/GGT	-	-	1					1
AGC/CTG	-	-	2					2
CCG/CGG	-	-	4	2				6
AAAAC/GTTTT	1							1
ACATC/ATGTG	1							1
ACGCC/CGTGG	1							1
CCCGG/CCGGG	2							2
CCGCG/CGCGG	2							2
AAAAAT/ATTTTT				1				1
AAAATG/ATTTTC	1							1
AACAGC/CTGTTG	1							1
ACCGTG/ACGGTC	1							1
AGAGCC/CTCTGG							1	1
AGCAGG/CCTGCT	1							1
AGCGCC/CGCTGG	1							1
AGCTGC/AGCTGC	1							1
