Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-95/megassr/results/hub_GCF_040151335.1/fasta/hub_GCF_040151335.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              20
Total size of examined sequences (bp):           5143431
Total number of identified SSRs:                 25
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	9
5	7
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
GC	-	-	-	1								1
AGC	-	-	1									1
CAG	-	-	1									1
CGC	-	-	1	1								2
CGG	-	-	3									3
GGC	-	-		1								1
GTG	-	-	1									1
ATGTG	1											1
CCGCG	2											2
CCGGC	1											1
GCGTG	1											1
GGCCG	1											1
TGTTT	1											1
AATGAA	1											1
ACAGCA	1											1
AGCAGG	1											1
AGCTGC	1											1
CAGCGC	1											1
CGGTCA	1											1
TGGCTC											1	1
TTTTTA				1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG/CG	-	-	-	1								1
ACC/GGT	-	-	1									1
AGC/CTG	-	-	2									2
CCG/CGG	-	-	4	2								6
AAAAC/GTTTT	1											1
ACATC/ATGTG	1											1
ACGCC/CGTGG	1											1
CCCGG/CCGGG	2											2
CCGCG/CGCGG	2											2
AAAAAT/ATTTTT				1								1
AAAATG/ATTTTC	1											1
AACAGC/CTGTTG	1											1
ACCGTG/ACGGTC	1											1
AGAGCC/CTCTGG											1	1
AGCAGG/CCTGCT	1											1
AGCGCC/CGCTGG	1											1
AGCTGC/AGCTGC	1											1
