Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-93/megassr/results/hub_GCF_039679065.1/fasta/hub_GCF_039679065.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              40
Total size of examined sequences (bp):           6378458
Total number of identified SSRs:                 51
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  13
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	9
4	1
5	10
6	27

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AG	-	-	-	1								1
CG	-	-	-	1								1
GC	-	-	-	2								2
CAC	-	-	1									1
CCG	-	-	1									1
CGC	-	-	1									1
CGG	-	-	1									1
GCC	-	-	2									2
GCG	-	-	2									2
GGT	-	-	1									1
GCGT	-	1										1
CGCCG	2											2
CGCGC	1											1
CGGCG	1											1
CTCGC	1											1
GCCAG	1											1
GCGCC	1											1
GCGGC	2											2
TCCCT	1											1
AAGGCC	1											1
ACAGCG	1											1
AGGGCG	1											1
CCAGGG	1											1
CCGAGC								1				1
CCGAGG	1											1
CCGCGC	1											1
CCTGAC	1											1
CGCCGA		1										1
CGCTGG	1											1
CGGGCT								1				1
CGTGAT			1									1
GAACAT		1										1
GATGCT	1											1
GCCACC	1											1
GCCCTG	1											1
GGCCAT	1											1
GGCCCA	1											1
GGCGCT	2											2
GGGCCA	1											1
GGTGGC	1											1
GTCACG	1											1
GTTGGC									1			1
TGCTGG		1										1
TGGCTG											1	1
TGTTCC	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AG/CT	-	-	-	1								1
CG/CG	-	-	-	3								3
ACC/GGT	-	-	2									2
CCG/CGG	-	-	7									7
ACGC/CGTG	-	1										1
AAGGG/CCCTT	1											1
AGGCC/CCTGG	1											1
AGGCG/CCTCG	1											1
CCGCG/CGCGG	7											7
AACAGG/CCTGTT	1											1
AACATG/ATGTTC		1										1
AACGCC/CGTTGG									1			1
AAGGCC/CCTTGG	1											1
ACAGCC/CTGTGG											1	1
ACAGCG/CGCTGT	1											1
ACCAGC/CTGGTG		1										1
ACCCTG/AGGGTC	1											1
ACCGCC/CGGTGG	2											2
ACCGTG/ACGGTC	1											1
ACGATC/ATCGTG			1									1
ACGCCG/CGGCGT		1										1
AGCATC/ATGCTG	1											1
AGCCCG/CGGGCT								2				2
AGCGCC/CGCTGG	3											3
AGGCCC/CCTGGG	1											1
AGGCCG/CCTCGG	1											1
AGGGCC/CCCTGG	3											3
AGGGCG/CCCTCG	1											1
ATGGCC/ATGGCC	1											1
CCCGCG/CGCGGG	1											1
