Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-92/megassr/results/hub_GCF_039677685.1/fasta/hub_GCF_039677685.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              105
Total size of examined sequences (bp):           6466286
Total number of identified SSRs:                 52
Number of SSR containing sequences:              21
Number of sequences containing more than 1 SSR:  13
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	9
4	1
5	10
6	28

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AG	-	-	-	1									1
CG	-	-	-	1									1
GC	-	-	-	2									2
CAC	-	-	1										1
CCG	-	-	1										1
CGC	-	-	2										2
CGG	-	-	1										1
GCC	-	-	2										2
GCG	-	-	1										1
GGT	-	-	1										1
GCGT	-	1											1
CGCCG	2												2
CGCGC	1												1
CGGCG	1												1
CTCGC	1												1
GCCAG	1												1
GCGCC	1												1
GCGGC	2												2
TCCCT	1												1
AAGGCC	1												1
ACAGCG	1												1
AGAGGC	1												1
AGGGCG	1												1
CCAGGG	1												1
CCGAGC								1					1
CCGAGG	1												1
CCGCGC	1												1
CCTGAC	1												1
CGCCAC	1												1
CGCCGA		1											1
CGCTGG	1												1
CGGGCT								1					1
CGTGAT			1										1
GAACAT		1											1
GATGCT	1												1
GCCACC	1												1
GCCCTG	1												1
GGCCAT	1												1
GGCCCA	1												1
GGCGCT	2												2
GGGCCA	1												1
GTCACG	1												1
GTTGGC			1										1
TGCTGG		1											1
TGGCTG												1	1
TGTTCC	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AG/CT	-	-	-	1									1
CG/CG	-	-	-	3									3
ACC/GGT	-	-	2										2
CCG/CGG	-	-	7										7
ACGC/CGTG	-	1											1
AAGGG/CCCTT	1												1
AGGCC/CCTGG	1												1
AGGCG/CCTCG	1												1
CCGCG/CGCGG	7												7
AACAGG/CCTGTT	1												1
AACATG/ATGTTC		1											1
AACGCC/CGTTGG			1										1
AAGGCC/CCTTGG	1												1
ACAGCC/CTGTGG												1	1
ACAGCG/CGCTGT	1												1
ACCAGC/CTGGTG		1											1
ACCCTG/AGGGTC	1												1
ACCGCC/CGGTGG	2												2
ACCGTG/ACGGTC	1												1
ACGATC/ATCGTG			1										1
ACGCCG/CGGCGT		1											1
AGAGGC/CCTCTG	1												1
AGCATC/ATGCTG	1												1
AGCCCG/CGGGCT								2					2
AGCGCC/CGCTGG	3												3
AGGCCC/CCTGGG	1												1
AGGCCG/CCTCGG	1												1
AGGGCC/CCCTGG	3												3
AGGGCG/CCCTCG	1												1
ATGGCC/ATGGCC	1												1
CCCGCG/CGCGGG	1												1
