Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-98/megassr/results/hub_GCF_039414235.2/fasta/hub_GCF_039414235.2_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              19
Total size of examined sequences (bp):           2541291
Total number of identified SSRs:                 6
Number of SSR containing sequences:              5
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
5	3
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	total
CCCAC	1	1
CCGCA	1	1
CCGCC	1	1
GAAAGC	1	1
GGTGGG	1	1
TGACAT	1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	total
ACCCC/GGGGT	1	1
ACCGC/CGGTG	1	1
CCCCG/CGGGG	1	1
AAAGCG/CGCTTT	1	1
AATGTC/ACATTG	1	1
ACCCCC/GGGGGT	1	1
