Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-91/megassr/results/hub_GCF_037937175.1/fasta/hub_GCF_037937175.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              31
Total size of examined sequences (bp):           4908316
Total number of identified SSRs:                 27
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	12
5	5
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	4	1	5
GC	-	-	-	1		1
CCA	-	-	1			1
CCG	-	-	2			2
CGC	-	-		1		1
CGG	-	-	1			1
CTG	-	-	2			2
GCA	-	-	1			1
GCC	-	-	1			1
GGC	-	-		1		1
TCA	-	-	1			1
TCG	-	-	1			1
CCCGG	1					1
CGCGG	2					2
CTTCC	1					1
GGCGC	1					1
CCGGAG		1				1
CGCTGA	1					1
CGGTAT	1					1
GTGGAA	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	5	1	6
ACC/GGT	-	-	1			1
ACG/CGT	-	-	1			1
AGC/CTG	-	-	3			3
ATC/ATG	-	-	1			1
CCG/CGG	-	-	4	2		6
AAGGG/CCCTT	1					1
CCCGG/CCGGG	1					1
CCGCG/CGCGG	3					3
AAGTGG/ACTTCC	1					1
ACCGAT/ATCGGT	1					1
ACGCTG/AGCGTC	1					1
AGCCGG/CCGGCT		1				1
