Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-90/megassr/results/hub_GCF_037937105.1/fasta/hub_GCF_037937105.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              72
Total size of examined sequences (bp):           5288060
Total number of identified SSRs:                 31
Number of SSR containing sequences:              22
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	10
4	1
5	8
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	3	1	4
GC	-	-	-	1		1
CAG	-	-	1			1
CCG	-	-	2			2
CGG	-	-	2			2
CTG	-	-	1			1
GAC	-	-	1			1
GCA	-	-	1			1
GCC	-	-	1			1
GCG	-	-		1		1
CCAG	-	1				1
AATTG	1					1
ACGGC	1					1
CCACG	1					1
CCCGG	1					1
CCGGG	1					1
CGCCG	1					1
CGCGG	1					1
GGCGC	1					1
CACGAT	1					1
CGCCTG	1					1
CTGGTG	1					1
GCTCCG		1				1
GGCGGT		1				1
GTGGAA	1					1
TCAGCG	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	4	1	5
ACG/CGT	-	-	1			1
AGC/CTG	-	-	3			3
CCG/CGG	-	-	5	1		6
AGCC/CTGG	-	1				1
AATTC/AATTG	1					1
ACGCC/CGTGG	1					1
ACGGC/CCGTG	1					1
CCCGG/CCGGG	2					2
CCGCG/CGCGG	3					3
AAGTGG/ACTTCC	1					1
ACCAGC/CTGGTG	1					1
ACCGCC/CGGTGG		1				1
ACGATC/ATCGTG	1					1
ACGCTG/AGCGTC	1					1
AGCCGG/CCGGCT		1				1
AGGCGC/CCTGCG	1					1
