Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-78/megassr/results/hub_GCF_036857425.1/fasta/hub_GCF_036857425.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              107
Total size of examined sequences (bp):           6111122
Total number of identified SSRs:                 51
Number of SSR containing sequences:              25
Number of sequences containing more than 1 SSR:  11
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	4
3	5
4	1
5	6
6	33

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	171	172	173	174	175	176	177	178	179	180	181	182	183	184	185	186	187	188	189	190	191	192	193	194	195	196	197	198	199	200	201	202	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																	1																																																																																																																																																						1	2
GC	-	-	-	3																																																																																																																																																																																																					3
TG	-	-	-	1																																																																																																																																																																																																					1
CGG	-	-	2																																																																																																																																																																																																						2
CTG	-	-	1																																																																																																																																																																																																						1
GCG	-	-	2																																																																																																																																																																																																						2
GGCA	-	1																																																																																																																																																																																																							1
AAATA	1																																																																																																																																																																																																								1
ACACC	1																																																																																																																																																																																																								1
AGGGC	1																																																																																																																																																																																																								1
GCGGC	1																																																																																																																																																																																																								1
GGTAG	1																																																																																																																																																																																																								1
TGCTC	1																																																																																																																																																																																																								1
ACTGCC	1																																																																																																																																																																																																								1
ACTGGG	1																																																																																																																																																																																																								1
AGATCA	4																																																																																																																																																																																																								4
AGGCCC	1																																																																																																																																																																																																								1
ATGGCC	1																																																																																																																																																																																																								1
CAAGAG	1																																																																																																																																																																																																								1
CAAGCC	1																																																																																																																																																																																																								1
CAGAGC	1																																																																																																																																																																																																								1
CAGGCC	1																																																																																																																																																																																																								1
CCAGGC	2																																																																																																																																																																																																								2
CCGGCA	1																																																																																																																																																																																																								1
CCGGCG	1																																																																																																																																																																																																								1
CGGCAG	1																																																																																																																																																																																																								1
CTGGCC	1																																																																																																																																																																																																								1
CTTGAT	2																																																																																																																																																																																																								2
GGCATC	1																																																																																																																																																																																																								1
GGCCTG	1																																																																																																																																																																																																								1
GGCTTG	1																																																																																																																																																																																																								1
GGGCCA	1																																																																																																																																																																																																								1
GGGCCT	1																																																																																																																																																																																																								1
GTCGCA		1																																																																																																																																																																																																							1
TCTTGA	3		1																																																																																																																																																																																																						4
TGATCT	1																																																																																																																																																																																																								1
TGCTGG	1																																																																																																																																																																																																								1
TTGCCC	1																																																																																																																																																																																																								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	171	172	173	174	175	176	177	178	179	180	181	182	183	184	185	186	187	188	189	190	191	192	193	194	195	196	197	198	199	200	201	202	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																	1																																																																																																																																																						1	2
AC/GT	-	-	-	1																																																																																																																																																																																																					1
CG/CG	-	-	-	3																																																																																																																																																																																																					3
AGC/CTG	-	-	1																																																																																																																																																																																																						1
CCG/CGG	-	-	4																																																																																																																																																																																																						4
AGGC/CCTG	-	1																																																																																																																																																																																																							1
AAAAT/ATTTT	1																																																																																																																																																																																																								1
ACACC/GGTGT	1																																																																																																																																																																																																								1
ACCCT/AGGGT	1																																																																																																																																																																																																								1
AGAGC/CTCTG	1																																																																																																																																																																																																								1
AGGGC/CCCTG	1																																																																																																																																																																																																								1
CCGCG/CGCGG	1																																																																																																																																																																																																								1
AAGAGC/CTCTTG	1																																																																																																																																																																																																								1
AAGATC/ATCTTG	10		1																																																																																																																																																																																																						11
AAGCCC/CTTGGG	2																																																																																																																																																																																																								2
AAGGGC/CCCTTG	1																																																																																																																																																																																																								1
ACCAGC/CTGGTG	1																																																																																																																																																																																																								1
ACCGGC/CCGGTG	1																																																																																																																																																																																																								1
ACTGCC/AGTGGC	1																																																																																																																																																																																																								1
ACTGCG/AGTCGC		1																																																																																																																																																																																																							1
ACTGGG/AGTCCC	1																																																																																																																																																																																																								1
AGAGCC/CTCTGG	1																																																																																																																																																																																																								1
AGCGGC/CCGCTG	1																																																																																																																																																																																																								1
AGGCCC/CCTGGG	6																																																																																																																																																																																																								6
AGGGCC/CCCTGG	2																																																																																																																																																																																																								2
ATCGGC/ATGCCG	1																																																																																																																																																																																																								1
ATGGCC/ATGGCC	1																																																																																																																																																																																																								1
CCGGCG/CCGGCG	1																																																																																																																																																																																																								1
