Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-96/megassr/results/hub_GCF_035750805.1/fasta/hub_GCF_035750805.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           2324674
Total number of identified SSRs:                 7
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
4	1
5	5
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	total
TTTA	-	1	1
ATTTT	1		1
TATTA	1		1
TTGTT	1		1
TTTTG	2		2
TCTTTA	1		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	total
AAAT/ATTT	-	1	1
AAAAC/GTTTT	3		3
AAAAT/ATTTT	1		1
AATAT/ATATT	1		1
AAAGAT/ATCTTT	1		1
