Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-77/megassr/results/hub_GCF_035066425.1/fasta/hub_GCF_035066425.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              97
Total size of examined sequences (bp):           5768943
Total number of identified SSRs:                 46
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  10
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	19
5	10
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	2	1	3
GC	-	-	-	1		1
CAG	-	-	1			1
CCA	-	-	1			1
CCG	-	-	2			2
CGG	-	-	4	1		5
CTG	-	-	1			1
GAC	-	-	1			1
GCA	-	-	1			1
GCC	-	-		1		1
GCG	-	-	1			1
GCT	-	-	2			2
GGC	-	-	2			2
GTC	-	-	1			1
AGAAG	1					1
ATAAA	1					1
CGCGG	1					1
CGTGG	1					1
GCCGG	1					1
GCGCC	1					1
GCGTA	1					1
GGCGC	1					1
TTATT	1					1
TTTTA	1					1
CACGAT	1					1
CCCTGC	1					1
CCGGAG		1				1
CGACTC	1		1			2
CGACTT	1					1
CTGGTG	1					1
GACGAA	1					1
GACTCC	1					1
GCAGGA	1					1
GCGCAC	1					1
GGTGCT	1					1
TTCCAC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	3	1	4
ACC/GGT	-	-	1			1
ACG/CGT	-	-	2			2
AGC/CTG	-	-	5			5
CCG/CGG	-	-	9	2		11
AAAAT/ATTTT	3					3
AAGAG/CTCTT	1					1
ACGCC/CGTGG	1					1
ACGCT/AGCGT	1					1
CCCGG/CCGGG	1					1
CCGCG/CGCGG	3					3
AAGACG/CGTCTT	1					1
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
ACCAGC/CTGGTG	2					2
ACGATC/ATCGTG	1					1
ACGCGC/CGCGTG	1					1
ACTCCG/AGTCGG	2		1			3
AGCAGG/CCTGCT	1					1
AGCCGG/CCGGCT		1				1
AGGGGC/CCCCTG	1					1
