Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-124/megassr/results/hub_GCF_035066325.1/fasta/hub_GCF_035066325.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              35
Total size of examined sequences (bp):           4755444
Total number of identified SSRs:                 22
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	5
5	5
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
CG	-	-	-	2														2
GC	-	-	-	1														1
CCG	-	-	2															2
CGC	-	-	1															1
CTG	-	-	1															1
GGC	-	-	1															1
CGCCA														1				1
CGCGC	1																	1
GCGTG	1																	1
GGCGC	1																	1
TTCAA	1																	1
AACAAA	1																	1
CAGCCG	1																	1
CATCAC	1																	1
CGACTT	1																	1
CTGGCG	1																	1
GCGCCA	1																	1
GGCTCT																1		1
GGCTGC	1																	1
TGGCTC																	1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
CG/CG	-	-	-	3														3
AGC/CTG	-	-	1															1
CCG/CGG	-	-	4															4
AATTC/AATTG	1																	1
ACGCC/CGTGG	1													1				2
CCGCG/CGCGG	2																	2
AAAAAC/GTTTTT	1																	1
AAGTCG/ACTTCG	1																	1
ACCATC/ATGGTG	1																	1
AGAGCC/CTCTGG																1	1	2
AGCCGC/CGGCTG	2																	2
AGCGCC/CGCTGG	2																	2
