Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-122/megassr/results/hub_GCF_035066285.1/fasta/hub_GCF_035066285.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              64
Total size of examined sequences (bp):           4728717
Total number of identified SSRs:                 22
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	8
5	5
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	1	1
CG	-	-	-	3	3
ACG	-	-		1	1
CAG	-	-	2		2
CGC	-	-	1	1	2
GAA	-	-	1		1
GGA	-	-	1		1
GGC	-	-	1		1
CGCGC	2				2
GCGTG	1				1
GGGCG	1				1
TGTTG		1			1
ATAAAA	1				1
CGACTT	1				1
CTGGTT	1				1
GAACCT	1				1
GCGCCA	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
CG/CG	-	-	-	3	3
AAG/CTT	-	-	1		1
ACG/CGT	-	-		1	1
AGC/CTG	-	-	2		2
AGG/CCT	-	-	1		1
CCG/CGG	-	-	2	1	3
AACAC/GTGTT		1			1
ACGCC/CGTGG	1				1
CCCCG/CGGGG	1				1
CCGCG/CGCGG	2				2
AAAAAT/ATTTTT	1				1
AACCAG/CTGGTT	1				1
AACCTG/AGGTTC	1				1
AAGTCG/ACTTCG	1				1
AGCGCC/CGCTGG	1				1
