Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-87/megassr/results/hub_GCF_035066265.1/fasta/hub_GCF_035066265.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              121
Total size of examined sequences (bp):           6306776
Total number of identified SSRs:                 42
Number of SSR containing sequences:              25
Number of sequences containing more than 1 SSR:  14
Number of SSRs present in compound formation:    4


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	1
3	3
5	7
6	29

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																																																												2	2
GC	-	-	-	1																																																																																																										1
GGC	-	-				1																																																																																																								1
GGT	-	-	2																																																																																																											2
AGCCC	1																																																																																																													1
CAGCC	1																																																																																																													1
CCAGT	1																																																																																																													1
CGCAG	1																																																																																																													1
CGCCG	1																																																																																																													1
GGCCA	1																																																																																																													1
GGCGT	1																																																																																																													1
AACAGC				1																																																																																																										1
AAGATC				1																																																																																																										1
AAGCAG		1																																																																																																												1
AGCAAG							1																																																																																																							1
AGCCGG		1																																																																																																												1
AGCGAG		1																																																																																																												1
AGGCTG	1																																																																																																													1
CAGGAA	1																																																																																																													1
CAGGCC	1																																																																																																													1
CATCGG	1																																																																																																													1
CATGAC		1																																																																																																												1
CCACCC	1																																																																																																													1
CCCGCG	1																																																																																																													1
CCGCAT			1																																																																																																											1
CCGTTC	1																																																																																																													1
CCTTGA	1																																																																																																													1
CGGCCC	1																																																																																																													1
CGTTGC				1																																																																																																										1
GAAGGG	1																																																																																																													1
GCGCCC	1																																																																																																													1
GGCCAT	1																																																																																																													1
GGCCCA			1																																																																																																											1
GTGCGA	1																																																																																																													1
TCGCGG	1																																																																																																													1
TCTCGG				1																																																																																																										1
TGATCT									1																																																																																																					1
TGCCGT				1																																																																																																										1
TGCGGG	1																																																																																																													1
TTGATC								1																																																																																																						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																																																												2	2
CG/CG	-	-	-	1																																																																																																										1
ACC/GGT	-	-	2																																																																																																											2
CCG/CGG	-	-				1																																																																																																								1
ACGCC/CGTGG	1																																																																																																													1
ACTGG/AGTCC	1																																																																																																													1
AGCCC/CTGGG	2																																																																																																													2
AGCGC/CGCTG	1																																																																																																													1
AGGCC/CCTGG	1																																																																																																													1
CCGCG/CGCGG	1																																																																																																													1
AACAGC/CTGTTG				1																																																																																																										1
AACAGG/CCTGTT	1																																																																																																													1
AACGGC/CCGTTG				2																																																																																																										2
AACGGG/CCCGTT	1																																																																																																													1
AAGAGC/CTCTTG							1																																																																																																							1
AAGATC/ATCTTG				1				1	1																																																																																																					3
AAGCAG/CTGCTT		1																																																																																																												1
AAGGGG/CCCCTT	1																																																																																																													1
AAGGTC/ACCTTG	1																																																																																																													1
ACCATG/ATGGTC		1																																																																																																												1
ACCCCC/GGGGGT	1																																																																																																													1
ACCCGC/CGGGTG	1																																																																																																													1
ACCGAG/CGGTCT				1																																																																																																										1
ACCGCG/CGCGGT	1																																																																																																													1
ACTCGC/AGTGCG	1																																																																																																													1
AGAGCG/CGCTCT		1																																																																																																												1
AGCCGG/CCGGCT		1																																																																																																												1
AGCCTC/AGGCTG	1																																																																																																													1
AGGCCC/CCTGGG	1		1																																																																																																											2
ATCCGC/ATGCGG			1																																																																																																											1
ATCGGC/ATGCCG	1																																																																																																													1
ATGGCC/ATGGCC	1																																																																																																													1
CCCCGG/CCGGGG	1																																																																																																													1
CCCGCG/CGCGGG	2																																																																																																													2
