Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-86/megassr/results/hub_GCF_035066245.1/fasta/hub_GCF_035066245.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              125
Total size of examined sequences (bp):           6380034
Total number of identified SSRs:                 41
Number of SSR containing sequences:              23
Number of sequences containing more than 1 SSR:  10
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	8
4	1
5	9
6	21

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
CG	-	-	-	2														2
CCG	-	-	1															1
CGC	-	-	1															1
GCC	-	-		1														1
GCG	-	-	1	1														2
GGT	-	-	3															3
GCCA	-	1																1
ACTGG	1																	1
AGCTC	1																	1
ATTGG	1																	1
CGCAG	1																	1
CGCCC	1																	1
GCAGG	1																	1
GCCAA	1																	1
GCCTG	1																	1
GCGGG	1																	1
ACCTGC	1																	1
AGCAAG		2																2
ATGCAG	1																	1
CAGCAC	1																	1
CAGGCC	1																	1
CCACCC	1																	1
CCGCAC																1		1
CGAAGC	1																	1
CGGGGC	1																	1
CTGAAC					1													1
CTGAGC		1																1
CTGCCG	1																	1
CTGTTG	1																	1
GCAAAG	1																	1
GCACCC																	1	1
GCCATG	1																	1
GCCGTT					1													1
GGCCAT	1																	1
TGACCT	1																	1
TGCGGA			1															1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
CG/CG	-	-	-	2														2
ACC/GGT	-	-	3															3
CCG/CGG	-	-	3	2														5
AGCC/CTGG	-	1																1
AAGCC/CTTGG	1																	1
AATCC/ATTGG	1																	1
ACTGG/AGTCC	1																	1
AGCGC/CGCTG	1																	1
AGCTC/AGCTG	1																	1
AGGCC/CCTGG	1																	1
AGGGC/CCCTG	1																	1
CCCCG/CGGGG	2																	2
AAAGGC/CCTTTG	1																	1
AACAGC/CTGTTG	1																	1
AACCTG/AGGTTC					1													1
AACGGC/CCGTTG					1													1
AAGAGC/CTCTTG		2																2
AAGCCG/CGGCTT	1																	1
AAGGTC/ACCTTG	1																	1
ACCAGC/CTGGTG	1																	1
ACCCCC/GGGGGT	1																	1
ACCCGC/CGGGTG																1	1	2
ACCTGC/AGGTGC	1																	1
AGATGC/ATCTGC	1																	1
AGCCTG/AGGCTC		1																1
AGCGGC/CCGCTG	1																	1
AGGCCC/CCTGGG	1																	1
ATCCGC/ATGCGG			1															1
ATGGCC/ATGGCC	2																	2
CCCCGG/CCGGGG	1																	1
