Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-78/megassr/results/hub_GCF_034043435.1/fasta/hub_GCF_034043435.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              4
Total size of examined sequences (bp):           2708221
Total number of identified SSRs:                 15
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	5
5	4
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AT	-	-	-		1	1
TA	-	-	-	2		2
GAA	-	-	2			2
TGA	-	-	1			1
TGC	-	-	1			1
TTC	-	-	1			1
AATTT		1				1
TATTT	1					1
TGTTG	1					1
TTATT		1				1
TTCATC	1					1
TTTGAT	1					1
TTTTAT	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AT/AT	-	-	-	2	1	3
AAG/CTT	-	-	3			3
AGC/CTG	-	-	1			1
ATC/ATG	-	-	1			1
AAAAT/ATTTT	1	1				2
AAATT/AATTT		1				1
AACAC/GTGTT	1					1
AAAAAT/ATTTTT	1					1
AAAATC/ATTTTG	1					1
AAGATG/ATCTTC	1					1
