Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-76/megassr/results/hub_GCF_034030455.1/fasta/hub_GCF_034030455.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              7
Total size of examined sequences (bp):           2944074
Total number of identified SSRs:                 14
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	3
5	5
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	1	1
TA	-	-	-	2	2
ATT	-	-	1		1
TAA	-	-	1		1
TTC	-	-	1		1
AAATT	1				1
AAGAA	1				1
ATTTA	1				1
TTGAT	1				1
TTTTA	1				1
CACCAG	1				1
GTTTTA	1				1
TGATAC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	3	3
AAG/CTT	-	-	1		1
AAT/ATT	-	-	2		2
AAAAG/CTTTT	1				1
AAAAT/ATTTT	1				1
AAATC/ATTTG	1				1
AAATT/AATTT	2				2
AAAACT/AGTTTT	1				1
ACCAGC/CTGGTG	1				1
ACTGAT/AGTATC	1				1
