Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-75/megassr/results/hub_GCF_034025975.1/fasta/hub_GCF_034025975.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              3
Total size of examined sequences (bp):           2571919
Total number of identified SSRs:                 10
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	3
4	1
5	4
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	total
ATT	-	-	1	1
GCA	-	-	1	1
TTC	-	-	1	1
TTTA	-	1		1
TATTA	1			1
TTGTT	1			1
TTTTG	2			2
ATCTGA	1			1
GTCTGA	1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	total
AAG/CTT	-	-	1	1
AAT/ATT	-	-	1	1
AGC/CTG	-	-	1	1
AAAT/ATTT	-	1		1
AAAAC/GTTTT	3			3
AATAT/ATATT	1			1
AATCTG/AGATTC	1			1
ACTCAG/AGTCTG	1			1
