Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-99/megassr/results/hub_GCF_034015935.1/fasta/hub_GCF_034015935.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           2568537
Total number of identified SSRs:                 29
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    14


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	1
5	1
6	27

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	total
GTT	-	-	1	1
ATAAA	1			1
AAAGAC	1			1
GACGCC	1			1
GACGCT	4			4
GATGCA	4	4	1	9
GATGCC	1	1		2
GATGCG			1	1
GATGCT	1			1
GCCGAT	2			2
GCTGAC	4			4
TAAAAT	1			1
TCCAAA	1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	total
AAC/GTT	-	-	1	1
AAAAT/ATTTT	1			1
AAAATT/AATTTT	1			1
AAAGAC/CTTTGT	1			1
AAATCC/ATTTGG	1			1
ACGCCG/CGGCGT	1			1
ACGCTG/AGCGTC	8			8
AGATGC/ATCTGC	4	4	1	9
AGCATC/ATGCTG	1			1
ATCCGC/ATGCGG			1	1
ATCGGC/ATGCCG	3	1		4
