Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-109/megassr/results/hub_GCF_033283605.1/fasta/hub_GCF_033283605.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              28
Total size of examined sequences (bp):           2573418
Total number of identified SSRs:                 11
Number of SSR containing sequences:              7
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	1
4	2
5	5
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
GC	-	-	-	1		1
TA	-	-	-		1	1
AAT	-	-	1			1
TATT	-	1				1
TTTA	-	1				1
ATTTT	1					1
CAAAA	1					1
TAATA	1					1
TTGTT	1					1
TTTTG	1					1
AGATAA	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AT/AT	-	-	-		1	1
CG/CG	-	-	-	1		1
AAT/ATT	-	-	1			1
AAAT/ATTT	-	2				2
AAAAC/GTTTT	3					3
AAAAT/ATTTT	1					1
AATAT/ATATT	1					1
AAAGAT/ATCTTT	1					1
