Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-106/megassr/results/hub_GCF_031847115.1/fasta/hub_GCF_031847115.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              19
Total size of examined sequences (bp):           2443338
Total number of identified SSRs:                 11
Number of SSR containing sequences:              6
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	1
4	2
5	5
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	1	1
GAA	-	-	1		1
AAAC	-	1			1
TAAA	-	1			1
AAAAT	1				1
AAACA	1				1
CAAAA	1				1
TAATA	1				1
TTTTG	1				1
ACAAGC	1				1
AGATAA	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
AAG/CTT	-	-	1		1
AAAC/GTTT	-	1			1
AAAT/ATTT	-	1			1
AAAAC/GTTTT	3				3
AAAAT/ATTTT	1				1
AATAT/ATATT	1				1
AAAGAT/ATCTTT	1				1
AAGCAC/CTTGTG	1				1
