Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-105/megassr/results/hub_GCF_031847015.1/fasta/hub_GCF_031847015.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              14
Total size of examined sequences (bp):           2337974
Total number of identified SSRs:                 9
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	1
4	1
5	2
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AT	-	-	-			1	1
TTC	-	-	1				1
ATAA	-	1					1
AACAA	1						1
ATATG	1						1
AGAAAA	1						1
GCGGCT	1						1
TAAAAA	1						1
TGTAGA	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-			1	1
AAG/CTT	-	-	1				1
AAAT/ATTT	-	1					1
AAAAC/GTTTT	1						1
ATATC/ATATG	1						1
AAAAAG/CTTTTT	1						1
AAAAAT/ATTTTT	1						1
ACATCT/AGATGT	1						1
AGCCGC/CGGCTG	1						1
