Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-104/megassr/results/hub_GCF_031846995.1/fasta/hub_GCF_031846995.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              29
Total size of examined sequences (bp):           2364429
Total number of identified SSRs:                 13
Number of SSR containing sequences:              7
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	1
4	1
5	2
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	1	1
GT	-	-	-	1	1
TA	-	-	-	2	2
TTC	-	-	1		1
ATAA	-	1			1
AACAA	1				1
ATATG	1				1
AGAAAA	1				1
CAGCCG	1				1
TAAAAA	1				1
TAATCC		1			1
TGCAAT	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AC/GT	-	-	-	1	1
AT/AT	-	-	-	3	3
AAG/CTT	-	-	1		1
AAAT/ATTT	-	1			1
AAAAC/GTTTT	1				1
ATATC/ATATG	1				1
AAAAAG/CTTTTT	1				1
AAAAAT/ATTTTT	1				1
AATCCT/AGGATT		1			1
AATTGC/AATTGC	1				1
AGCCGC/CGGCTG	1				1
