Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-120/megassr/results/hub_GCF_031846915.1/fasta/hub_GCF_031846915.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              40
Total size of examined sequences (bp):           2474736
Total number of identified SSRs:                 17
Number of SSR containing sequences:              11
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	1
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
TA	-	-	-	5		5
AAT	-	-			1	1
AAAAG	1					1
ATTAT	1					1
ATTTA	1					1
TTAAT	1					1
AAAGAA	1					1
AATGAT	1					1
ACATAC		1				1
CAACTA	1					1
GCTATA	1					1
TAATGA			1			1
TCTTTT	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AT/AT	-	-	-	5		5
AAT/ATT	-	-			1	1
AAAAG/CTTTT	1					1
AAATT/AATTT	2					2
AATAT/ATATT	1					1
AAAAAG/CTTTTT	2					2
AACTAC/AGTTGT	1					1
AATGAT/ATCATT	1		1			2
ACACAT/ATGTGT		1				1
AGCTAT/AGCTAT	1					1
