Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-118/megassr/results/hub_GCF_031846875.1/fasta/hub_GCF_031846875.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              52
Total size of examined sequences (bp):           2501153
Total number of identified SSRs:                 16
Number of SSR containing sequences:              11
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	1
5	6
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AT	-	-	-	1	1	2
TA	-	-	-	2		2
AAG	-	-	1			1
AATTA	1					1
ATAAA	1					1
ATAAT	1					1
ATTTA	1					1
CTTTT	1					1
TTATT	1					1
AAAGAA	1					1
ATAAAG	1					1
ATCATT	1					1
CTAAAG	1					1
GCTATA	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AT/AT	-	-	-	3	1	4
AAG/CTT	-	-	1			1
AAAAG/CTTTT	1					1
AAAAT/ATTTT	2					2
AAATT/AATTT	2					2
AATAT/ATATT	1					1
AAAAAG/CTTTTT	1					1
AAAGAT/ATCTTT	1					1
AAAGCT/AGCTTT	1					1
AATGAT/ATCATT	1					1
AGCTAT/AGCTAT	1					1
