Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-97/megassr/results/hub_GCF_031846675.1/fasta/hub_GCF_031846675.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              26
Total size of examined sequences (bp):           2296366
Total number of identified SSRs:                 6
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
4	1
5	2
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
GT	-	-	-	1	1
ATAA	-	1			1
ATATG	1				1
TTTGT	1				1
GCGGCT	1				1
TAAAAA	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AC/GT	-	-	-	1	1
AAAT/ATTT	-	1			1
AAAAC/GTTTT	1				1
ATATC/ATATG	1				1
AAAAAT/ATTTTT	1				1
AGCCGC/CGGCTG	1				1
