Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-96/megassr/results/hub_GCF_031846665.1/fasta/hub_GCF_031846665.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              22
Total size of examined sequences (bp):           2337691
Total number of identified SSRs:                 9
Number of SSR containing sequences:              5
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
4	1
5	2
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
TA	-	-	-	2	2
TTAT	-	1			1
AACAA	1				1
CATAT	1				1
ATTGCA	1				1
GCGGCT	1				1
TTTTTA	1				1
TTTTTC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	2	2
AAAT/ATTT	-	1			1
AAAAC/GTTTT	1				1
ATATC/ATATG	1				1
AAAAAG/CTTTTT	1				1
AAAAAT/ATTTTT	1				1
AATTGC/AATTGC	1				1
AGCCGC/CGGCTG	1				1
