Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-95/megassr/results/hub_GCF_031846615.1/fasta/hub_GCF_031846615.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              18
Total size of examined sequences (bp):           2434252
Total number of identified SSRs:                 10
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	1
4	2
5	3
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AT	-	-	-			2	2
ATA	-	-				1	1
ATAA	-	1					1
ATCC	-	1					1
ATATG	1						1
TTGAT	1						1
TTTGT	1						1
AAAGTC	1						1
CAGCCG	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-			2	2
AAT/ATT	-	-				1	1
AAAT/ATTT	-	1					1
ATCC/ATGG	-	1					1
AAAAC/GTTTT	1						1
AAATC/ATTTG	1						1
ATATC/ATATG	1						1
AAAGTC/ACTTTG	1						1
AGCCGC/CGGCTG	1						1
