Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-95/megassr/results/hub_GCF_031556365.1/fasta/hub_GCF_031556365.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              205
Total size of examined sequences (bp):           4233282
Total number of identified SSRs:                 44
Number of SSR containing sequences:              35
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	13
4	6
5	7
6	16

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
GA	-	-	-	1																	1
TC	-	-	-	1																	1
CAC	-	-	1																		1
CAG	-	-	1																		1
CGG	-	-	1																		1
CTA	-	-																		1	1
CTG	-	-	2																		2
GCC	-	-	2																		2
GCG	-	-	1																		1
GGC	-	-	2	1																	3
GGT	-	-	1																		1
CAGG	-		1																		1
CTGC	-				1																1
GCCT	-	1																			1
GCTG	-							1													1
GGCA	-												1								1
GGCG	-	1																			1
CCACA	1																				1
CCACT	1																				1
GCGCC	1																				1
GCGCG	1																				1
GGCGA	1																				1
GGCGC	1																				1
TTTGT	1																				1
AGCGCC	1																				1
ATTCCA	1																				1
CATGAA	1																				1
CATGAG			1																		1
CCACTC	1																				1
CGGCAA	1																				1
CGGGCT	1																				1
CTTGGC	1																				1
GAGGGC	1																				1
GATGAC			1																		1
GCCAGC		1																			1
GCTTAC	1																				1
GGCCAT	1																				1
TCGGCC	1																				1
TCTTCG			1																		1
TGGCGC	1																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
AG/CT	-	-	-	2																	2
ACC/GGT	-	-	2																		2
ACT/AGT	-	-																		1	1
AGC/CTG	-	-	3																		3
CCG/CGG	-	-	6	1																	7
AGCC/CTGG	-							1													1
AGGC/CCTG	-	1	1		1								1								4
CCCG/CGGG	-	1																			1
AAAAC/GTTTT	1																				1
ACACC/GGTGT	1																				1
ACTCC/AGTGG	1																				1
AGGCG/CCTCG	1																				1
CCGCG/CGCGG	3																				3
AACATG/ATGTTC	1																				1
AACGGC/CCGTTG	1																				1
AAGACG/CGTCTT			1																		1
AAGCGT/ACGCTT	1																				1
AAGGCC/CCTTGG	1																				1
AATTCC/AATTGG	1																				1
ACGATG/ATCGTC			1																		1
ACTCCC/AGTGGG	1																				1
AGCATG/ATGCTC			1																		1
AGCCCG/CGGGCT	1																				1
AGCGCC/CGCTGG	2	1																			3
AGGCCG/CCTCGG	1																				1
AGGGCG/CCCTCG	1																				1
ATGGCC/ATGGCC	1																				1
