Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-94/megassr/results/hub_GCF_031253835.1/fasta/hub_GCF_031253835.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              83
Total size of examined sequences (bp):           7554623
Total number of identified SSRs:                 113
Number of SSR containing sequences:              49
Number of sequences containing more than 1 SSR:  27
Number of SSRs present in compound formation:    4


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	30
3	21
4	6
5	31
6	25

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG	-	-	-	16								16
GC	-	-	-	13	1							14
AGC	-	-		1								1
CCG	-	-	2									2
CGC	-	-	3									3
CGG	-	-	3	1								4
CTG	-	-	2									2
GCC	-	-	2	1								3
GCG	-	-	4									4
GGC	-	-	2									2
GAAC	-	1										1
GCCG	-	2	1									3
GGCG	-	1										1
TCAT	-					1						1
CCGCG	3											3
CGCGC	4											4
CGCGG	1											1
CGCGT	3											3
CGCTG	1											1
GCACG	1											1
GCCGC	1											1
GCGCC	1											1
GCGCG	8											8
GCGGC	2											2
GCGGG	1											1
GCTGG	1											1
GTCAC	1											1
TCATT	1											1
TCGCG	1											1
TCGTG	1											1
CACCGT		1										1
CACGAC											1	1
CACGAT			1									1
CGACAC			1									1
CGATGC	1											1
CGCACA	1											1
CGCGGC	1											1
CGGCGC	1											1
CGGGTC	1											1
CGGTAG			1									1
CGTGGT	1											1
GCACCG	1											1
GCCGAT	1											1
GCGCCG	1											1
GCGCCT	1											1
GCGGCT		1										1
GGATAC		1										1
GGTCGA	4											4
GTTGCC	1											1
TGACCT	1											1
TGCGGT		1										1
TTACGC	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG/CG	-	-	-	29	1							30
AGC/CTG	-	-	2	1								3
CCG/CGG	-	-	16	2								18
AACG/CGTT	-	1										1
AATG/ATTC	-					1						1
CCCG/CGGG	-	1										1
CCGG/CCGG	-	2	1									3
AAATG/ATTTC	1											1
ACACG/CGTGT	1											1
ACGCG/CGCGT	4											4
ACGGC/CCGTG	1											1
ACGTC/ACGTG	1											1
AGCCC/CTGGG	1											1
AGCGC/CGCTG	1											1
CCCCG/CGGGG	1											1
CCGCG/CGCGG	20											20
AACCGC/CGGTTG		1										1
AACGGC/CCGTTG	1											1
AAGCGT/ACGCTT	1											1
AAGGTC/ACCTTG	1											1
ACACCG/CGGTGT			1									1
ACACGC/CGTGTG	1											1
ACCACG/CGTGGT	1										1	2
ACCCGG/CCGGGT	1											1
ACCGCT/AGCGGT			1									1
ACCGGC/CCGGTG	1											1
ACCGTC/ACGGTG		1										1
ACCTCG/AGGTCG	4											4
ACGATC/ATCGTG			1									1
ACGGAT/ATCCGT		1										1
AGCCGC/CGGCTG		1										1
AGGCGC/CCTGCG	1											1
ATCGGC/ATGCCG	2											2
CCGCGG/CCGCGG	1											1
CCGGCG/CCGGCG	2											2
