Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-127/megassr/results/hub_GCF_030927955.1/fasta/hub_GCF_030927955.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              165
Total size of examined sequences (bp):           5237021
Total number of identified SSRs:                 17
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	4
4	1
5	1
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
AT	-	-	-				1	1
CG	-	-	-	1				1
GC	-	-	-	1				1
AAG	-	-	1					1
CCG	-	-	1					1
CCT	-	-		1				1
CGG	-	-	1					1
CCAG	-	1						1
AGTTG	1							1
ACCGAT	1							1
CACAGG	1							1
CAGTAG				1				1
CGACTT	1							1
CGCCAG	1							1
CTGCAC					1			1
CTGGCG	1							1
GCGCCA	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AT/AT	-	-	-				1	1
CG/CG	-	-	-	2				2
AAG/CTT	-	-	1					1
AGG/CCT	-	-		1				1
CCG/CGG	-	-	2					2
AGCC/CTGG	-	1						1
AACTC/AGTTG	1							1
AAGTCG/ACTTCG	1							1
ACAGGC/CCTGTG	1							1
ACCGAT/ATCGGT	1							1
ACCTGC/AGGTGC					1			1
ACTGCT/AGCAGT				1				1
AGCGCC/CGCTGG	3							3
