Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-124/megassr/results/hub_GCF_030927845.1/fasta/hub_GCF_030927845.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              104
Total size of examined sequences (bp):           5219602
Total number of identified SSRs:                 19
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	4
4	1
5	2
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
AT	-	-	-				1	1
CG	-	-	-	2				2
AAG	-	-	1					1
CCG	-	-	2					2
CCT	-	-		1				1
CTGG	-	1						1
CATTT	1							1
TCAAC	1							1
AAGCAA			1					1
AGCGCC	1							1
CTGCTA				1				1
CTGGCG	1							1
GAAGTC	1							1
GCCTGT	1							1
GCGCCA	1							1
GGTGCA							1	1
TCGGTA	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AT/AT	-	-	-				1	1
CG/CG	-	-	-	2				2
AAG/CTT	-	-	1					1
AGG/CCT	-	-		1				1
CCG/CGG	-	-	2					2
AGCC/CTGG	-	1						1
AAATG/ATTTC	1							1
AACTC/AGTTG	1							1
AAAAGC/CTTTTG			1					1
AAGTCG/ACTTCG	1							1
ACAGGC/CCTGTG	1							1
ACCGAT/ATCGGT	1							1
ACCTGC/AGGTGC							1	1
ACTGCT/AGCAGT				1				1
AGCGCC/CGCTGG	3							3
