Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-121/megassr/results/hub_GCF_030927665.1/fasta/hub_GCF_030927665.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              220
Total size of examined sequences (bp):           5244091
Total number of identified SSRs:                 15
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	3
4	1
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	2			2
TA	-	-	-			1	1
TG	-	-	-	1			1
ATA	-	-	1				1
CCG	-	-	1				1
CGG	-	-	1				1
CCAG	-	1					1
AGCGCC	1						1
CACAGG	1						1
CGACTT	1						1
CGCCAG	1						1
CTGCTA	1						1
CTGGCG	1						1
GGTGCA				1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AC/GT	-	-	-	1			1
AT/AT	-	-	-			1	1
CG/CG	-	-	-	2			2
AAT/ATT	-	-	1				1
CCG/CGG	-	-	2				2
AGCC/CTGG	-	1					1
AAGTCG/ACTTCG	1						1
ACAGGC/CCTGTG	1						1
ACCTGC/AGGTGC				1			1
ACTGCT/AGCAGT	1						1
AGCGCC/CGCTGG	3						3
