Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-120/megassr/results/hub_GCF_030927595.1/fasta/hub_GCF_030927595.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              221
Total size of examined sequences (bp):           5238845
Total number of identified SSRs:                 15
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	4
3	3
4	1
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																																																											1	1
AT	-	-	-			1																																																																																																							1
CG	-	-	-	2																																																																																																									2
TG	-	-	-	1																																																																																																									1
ATA	-	-	1																																																																																																										1
CGG	-	-	2																																																																																																										2
CCAG	-	1																																																																																																											1
AGCGCC	1																																																																																																												1
CGCCAG	1																																																																																																												1
CTGCAC				1																																																																																																									1
GAAGTC	1																																																																																																												1
GCCTGT	1																																																																																																												1
GCGCCA	1																																																																																																												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																																																											1	1
AC/GT	-	-	-	1																																																																																																									1
AT/AT	-	-	-			1																																																																																																							1
CG/CG	-	-	-	2																																																																																																									2
AAT/ATT	-	-	1																																																																																																										1
CCG/CGG	-	-	2																																																																																																										2
AGCC/CTGG	-	1																																																																																																											1
AAGTCG/ACTTCG	1																																																																																																												1
ACAGGC/CCTGTG	1																																																																																																												1
ACCTGC/AGGTGC				1																																																																																																									1
AGCGCC/CGCTGG	3																																																																																																												3
