Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-119/megassr/results/hub_GCF_030927495.1/fasta/hub_GCF_030927495.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              160
Total size of examined sequences (bp):           5137250
Total number of identified SSRs:                 18
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	5
4	2
5	1
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG	-	-	-	1							1
AAG	-	-	1								1
CCG	-	-	1								1
CCT	-	-		1							1
CGG	-	-	1								1
TTC	-	-				1					1
AGGG	-									1	1
CCAG	-	1									1
TCAAC	1										1
AAGCAA			1								1
AGCGCC	1										1
ATAGAT	1										1
CTGCAC			1								1
CTGCTA				1							1
CTGGCG	1										1
GAAGTC	1										1
GCGCCA	1										1
TCGGTA	1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG/CG	-	-	-	1							1
AAG/CTT	-	-	1			1					2
AGG/CCT	-	-		1							1
CCG/CGG	-	-	2								2
AGCC/CTGG	-	1									1
AGGG/CCCT	-									1	1
AACTC/AGTTG	1										1
AAAAGC/CTTTTG			1								1
AAGTCG/ACTTCG	1										1
ACCGAT/ATCGGT	1										1
ACCTGC/AGGTGC			1								1
ACTGCT/AGCAGT				1							1
AGATAT/ATATCT	1										1
AGCGCC/CGCTGG	3										3
